A couple more I've noticed:
1) Wiggling/vibrating icons. When on an insane map, at least, the planet icons vibrate for a time after you scroll in or out. Not sure if anyone else is seeing this...
2) Wiggling/vibrating ships. This has been an issue ever since they smoothed out the movement to avoid the swimming back and forth along hexes, but it is more noticeable now with the engine afterburner effects.
3) Outreach III not working. The benevolent ideology option for +5 colony population on future planets is not adding 5.
4) Map settings change, duplicate map is generated. Oddly enough, the quickstart produces new maps but hitting "new" often generates a repeat map, even if settings like number of planets or frequency of resources is changed.
That's what I've found for now. Not sure if any of these can/should be submitted as a ticket...
Thanks for keeping up this list, Seilore!