It has improved from my first post. Here are the issues. I thought the intent of new weapons was to have a ship that does NOT use enhanced weapons (so not require resources), there are none. Kinetic ships (some) with missiles? Ship names duplicated > missing the -L,-R,-D... modifier.
Fix requires mods to shipblueprints, shipclass and factionshipstylesets and text. Easy way to see issue is start a new game, cheat>unlock and look in designer.
ps. did not mean to sound so critical, love what you have done with the game